Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_1502TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: fjo:Fjoh_3469 DNA uptake lipoprotein-like protein. (268 aa)    
Predicted Functional Partners:
Coch_1357
TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: fps:FP2096 outer membrane protein precursor.
 
 
 0.973
Coch_0776
KEGG: gfo:GFO_2980 conserved hypothetical protein, secreted.
 
 
 
 0.932
Coch_1501
KEGG: gfo:GFO_0649 hypothetical protein.
 
 
 
 0.920
Coch_1505
KEGG: gfo:GFO_3546 hypothetical protein.
 
   0.887
Coch_0943
KEGG: pdi:BDI_2049 hypothetical protein.
   
 
 0.867
Coch_0452
PFAM: surface antigen (D15); KEGG: gfo:GFO_0385 conserved hypothetical protein, secreted.
 
 
 0.743
Coch_1810
TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: gfo:GFO_0802 signal peptidase I; Belongs to the peptidase S26 family.
 
  
 0.725
Coch_1548
PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: fps:FP1402 hypothetical protein.
 
 
 
 0.667
Coch_0750
KEGG: gfo:GFO_3258 conserved hypothetical protein, secreted.
  
  
 0.661
Coch_1503
3-oxoacyl-(acyl-carrier-protein) reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.660
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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