Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_1601KEGG: gfo:GFO_0499 branched-chain-amino-acid aminotransferase; TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV. (350 aa)    
Predicted Functional Partners:
Coch_0411
KEGG: fjo:Fjoh_1494 aspartate kinase; TIGRFAM: aspartate kinase; PFAM: homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding; aspartate/glutamate/uridylate kinase.
  
 
 0.945
Coch_1685
Cystathionine gamma-synthase; PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein; KEGG: cac:CAC0390 cystathionine gamma-synthase.
   
 0.918
panB
3-methyl-2-oxobutanoatehydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.
    
 0.912
Coch_0944
TIGRFAM: threonine dehydratase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; amino acid-binding ACT domain protein; KEGG: fnu:FN1411 threonine dehydratase.
  
 0.889
Coch_0409
PFAM: alpha/beta hydrolase fold; KEGG: fps:FP0256 homoserine O-acetyltransferase; Belongs to the AB hydrolase superfamily. MetX family.
  
  
 0.740
Coch_0470
Hypothetical protein; KEGG: fjo:Fjoh_2213 pyruvate carboxyltransferase.
  
 
 0.714
Coch_1602
PFAM: protein of unknown function DUF752; KEGG: fjo:Fjoh_4769 hypothetical protein.
       0.611
Coch_0972
PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; KEGG: sbm:Shew185_2031 thiamine pyrophosphate binding domain-containing protein; Belongs to the TPP enzyme family.
  
 
 0.550
Coch_2105
PFAM: Transketolase domain protein; dehydrogenase E1 component; Transketolase central region; KEGG: fps:FP0719 putative pyruvate/branched-chain alpha-keto acid dehydrogenase (E1) component, alpha and beta subunits.
  
 
 0.461
Coch_0228
PFAM: DAHP synthetase I/KDSA; Chorismate mutase; KEGG: gfo:GFO_0343 bifunctional AroA(G) protein.
     
 0.431
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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