Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_1634Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. (160 aa)    
Predicted Functional Partners:
Coch_1827
PFAM: purine or other phosphorylase family 1; KEGG: fjo:Fjoh_2837 purine phosphorylase family 1.
 
 
 0.982
tdk
PFAM: thymidine kinase; KEGG: fps:FP1063 thymidine kinase.
    
 0.919
Coch_2005
TIGRFAM: uridine kinase; PFAM: phosphoribulokinase/uridine kinase; KEGG: gfo:GFO_0812 uridine kinase.
    
 0.918
Coch_1627
PFAM: deoxynucleoside kinase; KEGG: fps:FP0262 deoxynucleoside kinase.
    
 0.904
Coch_1793
PFAM: metallophosphoesterase; KEGG: fjo:Fjoh_3473 metallophosphoesterase; Belongs to the 5'-nucleotidase family.
    
  0.904
surE
Stationary-phase survival protein SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
     
 0.902
Coch_1635
KEGG: fps:FP1953 hypothetical protein.
       0.578
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
 
  
 0.534
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
 
  
 0.445
crcB
CrcB protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.
       0.437
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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