Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Coch_1672TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: fjo:Fjoh_1267 RND family efflux transporter MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (359 aa)    
Predicted Functional Partners:
Coch_1842
PFAM: acriflavin resistance protein; KEGG: fjo:Fjoh_1268 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.989
Coch_2173
PFAM: outer membrane efflux protein; KEGG: fjo:Fjoh_1266 outer membrane efflux protein.
 
 0.983
Coch_0319
TIGRFAM: transporter, hydrophobe/amphiphile efflux- 1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: gfo:GFO_3396 AcrB/AcrD/AcrF family membrane transport protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.964
Coch_0605
PFAM: outer membrane efflux protein; KEGG: bvu:BVU_3577 hypothetical protein.
 
 0.949
Coch_0384
PFAM: outer membrane efflux protein; KEGG: bth:BT_1212 outer membrane efflux protein.
  
 0.934
Coch_1941
PFAM: outer membrane efflux protein; KEGG: fjo:Fjoh_1671 outer membrane efflux protein.
  
 0.934
Coch_0292
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: gfo:GFO_3397 HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
     
 
0.900
Coch_0147
TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; outer membrane efflux protein; KEGG: chu:CHU_1512 cation efflux protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.888
Coch_0291
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: gfo:GFO_3395 OprM-like outer membrane efflux protein.
  
 0.869
Coch_0124
KEGG: pdi:BDI_1337 outer membrane efflux protein.
  
 0.699
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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