Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Coch_1697KEGG: pgi:PG0183 putative lipoprotein. (1461 aa)    
Predicted Functional Partners:
Coch_1698
KEGG: fjo:Fjoh_3951 hypothetical protein.
 
     0.865
Coch_1699
PFAM: OmpA/MotB domain protein; WD40 domain protein beta Propeller; KEGG: fps:FP1169 OmpA family outer membrane protein.
 
 
 0.782
Coch_1700
PFAM: OmpA/MotB domain protein; WD40 domain protein beta Propeller; KEGG: fps:FP1169 OmpA family outer membrane protein.
 
 
 0.710
Coch_0655
Putative phage repressor; PFAM: peptidase S24 and S26 domain protein; KEGG: chu:CHU_1881 transcriptional regulator.
  
    0.709
Coch_1588
Hypothetical protein; KEGG: gfo:GFO_1837 conserved hypothetical protein, secreted.
  
     0.695
Coch_1587
KEGG: gfo:GFO_0053 conserved hypothetical protein, secreted.
  
     0.690
Coch_1633
Protein involved in gliding motility SprA; KEGG: fjo:Fjoh_1653 hypothetical protein.
  
 
   0.625
Coch_1258
KEGG: gfo:GFO_2891 conserved hypothetical protein, secreted.
  
 
   0.569
Coch_0756
PFAM: protein of unknown function DUF323; KEGG: gfo:GFO_2892 gliding motility protein GldJ.
  
    0.552
Coch_1852
KEGG: fjo:Fjoh_4924 hypothetical protein.
  
    0.475
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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