Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Experiments
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[Homology]
Score
Coch_1699PFAM: OmpA/MotB domain protein; WD40 domain protein beta Propeller; KEGG: fps:FP1169 OmpA family outer membrane protein. (650 aa)    
Predicted Functional Partners:
Coch_1698
KEGG: fjo:Fjoh_3951 hypothetical protein.
 
     0.903
Coch_0551
PFAM: Tetratricopeptide TPR_2 repeat protein; Tetratricopeptide TPR_4; TPR repeat-containing protein; Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; Tetratricopeptide domain protein; KEGG: gfo:GFO_2543 conserved hypothetical protein, secreted.
 
 
 0.872
Coch_1700
PFAM: OmpA/MotB domain protein; WD40 domain protein beta Propeller; KEGG: fps:FP1169 OmpA family outer membrane protein.
 
 
0.828
Coch_1697
KEGG: pgi:PG0183 putative lipoprotein.
 
 
 0.782
Coch_1588
Hypothetical protein; KEGG: gfo:GFO_1837 conserved hypothetical protein, secreted.
 
     0.750
Coch_1587
KEGG: gfo:GFO_0053 conserved hypothetical protein, secreted.
 
     0.737
Coch_1705
PFAM: OmpA/MotB domain protein; KEGG: hypothetical protein; K03640 peptidoglycan- associated lipoprotein.
 
 
0.714
Coch_2029
SMART: Tetratricopeptide domain protein; KEGG: gfo:GFO_3274 hypothetical protein.
 
 
   0.659
Coch_0326
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: fjo:Fjoh_0213 TPR repeat-containing protein.
  
  
 0.656
Coch_1461
KEGG: fjo:Fjoh_2111 hypothetical protein.
 
 
 0.648
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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