STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Coch_1750KEGG: gfo:GFO_0784 conserved hypothetical protein, membrane. (351 aa)    
Predicted Functional Partners:
Coch_1748
KEGG: fps:FP0326 PorT protein.
       0.773
Coch_1749
KEGG: sus:Acid_4617 hypothetical protein.
       0.773
menG
Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2).
       0.723
Coch_0324
Hypothetical protein; KEGG: gfo:GFO_1901 conserved hypothetical protein, secreted.
  
     0.584
Coch_1853
KEGG: gfo:GFO_2286 hypothetical protein.
  
     0.582
Coch_1477
PFAM: Uroporphyrinogen III synthase HEM4; KEGG: fps:FP0042 uroporphyrinogen-III synthase.
  
     0.530
Coch_1612
KEGG: gfo:GFO_2695 hypothetical protein.
  
     0.519
Coch_1828
KEGG: gfo:GFO_0407 hypothetical protein.
  
     0.493
Coch_1746
TIGRFAM: 5'-nucleotidase, lipoprotein e(P4) family; PFAM: acid phosphatase (Class B); KEGG: hypothetical protein; K01078 acid phosphatase.
       0.487
Coch_1681
KEGG: gfo:GFO_3412 conserved hypothetical protein, membrane.
 
     0.467
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.