Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Coch_1772PFAM: protein of unknown function UPF0126; KEGG: apa:APP7_0170 hypothetical protein. (209 aa)    
Predicted Functional Partners:
Coch_1771
Hypothetical protein.
       0.620
Coch_1773
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: gfo:GFO_2529 ABC-type multidrug/protein/lipid transporter ATP-binding and permease component.
       0.574
Coch_1770
KEGG: fjo:Fjoh_5039 MiaB-like tRNA modifying enzyme; TIGRFAM: MiaB-like tRNA modifying enzyme; RNA modification enzyme, MiaB family; PFAM: Protein of unknown function UPF0004; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
       0.572
Coch_1774
TIGRFAM: isochorismate synthase; PFAM: Chorismate binding-like; KEGG: fjo:Fjoh_4718 isochorismate synthase.
     
 0.512
Coch_1769
KEGG: gfo:GFO_3422 hypothetical protein.
       0.502
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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