Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_1797PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bfr:BF1117 putative TonB-dependent outer membrane receptor protein. (647 aa)    
Predicted Functional Partners:
Coch_1799
KEGG: cts:Ctha_1008 hypothetical protein.
 
    0.861
Coch_1798
KEGG: pgn:PGN_0558 hypothetical protein.
 
    0.843
Coch_1186
SMART: Tetratricopeptide domain protein; KEGG: fjo:Fjoh_2813 O-antigen polymerase.
  
     0.588
Coch_1080
KEGG: bvu:BVU_2196 integral membrane protein.
 
    0.587
Coch_0753
Cobaltochelatase; PFAM: CobN/magnesium chelatase; KEGG: bfr:BF2689 protoporphyrin IX magnesium chelatase.
 
    0.486
Coch_1081
KEGG: bfs:BF2712 hypothetical protein.
 
    0.444
Coch_0473
PFAM: polysaccharide export protein; protein of unknown function DUF1017; KEGG: bfs:BF1707 putative capsule polysaccharide export protein.
  
     0.438
Coch_0472
PFAM: lipopolysaccharide biosynthesis protein; KEGG: pdi:BDI_1145 putative protein involved in capsular polysaccharide biosynthesis.
  
     0.425
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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