STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Coch_1900PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: fjo:Fjoh_2593 alpha amylase, catalytic region. (581 aa)    
Predicted Functional Partners:
Coch_1285
Alpha-glucan phosphorylase; KEGG: sat:SYN_00879 glycogen synthase/glycogen phosphorylase; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycogen synthase; glycosyl transferase family 35.
  
 0.939
Coch_1901
KEGG: fps:FP1353 Mur ligase family protein.
     
 0.781
Coch_1506
PFAM: Starch synthase catalytic domain protein; KEGG: gfo:GFO_3545 glycogen synthase N-terminal domain-like protein.
  
  
 0.692
Coch_1902
Hypothetical protein.
       0.682
Coch_1903
KEGG: mac:MA1007 cytochrome d ubiquinol oxidase, subunit II.
       0.682
Coch_0988
PFAM: Amylo-alpha-16-glucosidase; KEGG: bvu:BVU_2774 hypothetical protein.
 
  
 0.655
prfB
Bacterial peptide chain release factor 2 (bRF- 2); Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
       0.652
Coch_0986
PFAM: glycosyl transferase group 1; KEGG: aps:CFPG_506 putative glycogen synthase.
  
  0.511
frr
Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.
     
 0.485
Coch_1742
Phosphomannomutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: fps:FP0854 phosphoglucomutase/phosphomannomutase family protein.
  
  
 0.436
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.