Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_1900PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: fjo:Fjoh_2593 alpha amylase, catalytic region. (581 aa)    
Predicted Functional Partners:
Coch_1285
Alpha-glucan phosphorylase; KEGG: sat:SYN_00879 glycogen synthase/glycogen phosphorylase; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycogen synthase; glycosyl transferase family 35.
  
 0.877
Coch_0988
PFAM: Amylo-alpha-16-glucosidase; KEGG: bvu:BVU_2774 hypothetical protein.
 
 
 0.800
Coch_1901
KEGG: fps:FP1353 Mur ligase family protein.
     
 0.781
Coch_1506
PFAM: Starch synthase catalytic domain protein; KEGG: gfo:GFO_3545 glycogen synthase N-terminal domain-like protein.
  
  
 0.685
Coch_1902
Hypothetical protein.
       0.682
Coch_1903
KEGG: mac:MA1007 cytochrome d ubiquinol oxidase, subunit II.
       0.682
prfB
Bacterial peptide chain release factor 2 (bRF- 2); Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
     
 0.651
Coch_0986
PFAM: glycosyl transferase group 1; KEGG: aps:CFPG_506 putative glycogen synthase.
  
  0.485
frr
Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.
       0.482
Coch_1385
PFAM: Aldehyde Dehydrogenase; KEGG: gfo:GFO_0735 NADP-dependent glyceraldehyde-3- phosphate dehydrogenase.
 
 
 0.426
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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