STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Coch_1913Hypothetical protein. (76 aa)    
Predicted Functional Partners:
Coch_1914
TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin Txe/YoeB; KEGG: plt:Plut_1930 addiction module toxin, Txe/YoeB.
       0.773
Coch_1912
PFAM: Domain of unknown function DUF1877; KEGG: fnu:FN0339 hypothetical protein.
       0.701
Coch_1915
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fps:FP1042 translation intitiation regulation protein.
       0.671
Coch_1911
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: fma:FMG_0285 putative methyltransferase.
       0.516
Coch_1909
PFAM: ATPase associated with various cellular activities AAA_5; KEGG: spw:SPCG_1052 endonuclease, putative.
       0.480
Coch_1910
McrBC 5-methylcytosine restriction system component-like protein; KEGG: pgi:PG0972 hypothetical protein.
       0.480
Coch_1917
Hypothetical protein; KEGG: rcm:A1E_04720 NAD-dependent DNA ligase LigA.
       0.444
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.