STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Coch_1920PFAM: polysaccharide biosynthesis protein; KEGG: fjo:Fjoh_2426 polysaccharide biosynthesis protein. (484 aa)    
Predicted Functional Partners:
Coch_1919
PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: fjo:Fjoh_2590 TPR repeat-containing protein.
 
     0.834
Coch_1111
PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: fps:FP1286 FnlB protein involved in UDP-L- FucpNAc biosynthesis (a nucleotide sugar precursor for antigen-O biosynthesis).
  
  
 0.725
Coch_0712
KEGG: hya:HY04AAS1_0500 nucleotide sugar dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; UDP- glucose/GDP-mannose dehydrogenase; NAD-dependent glycerol- 3-phosphate dehydrogenase domain protein.
  
  
 0.684
Coch_0320
KEGG: gfo:GFO_1892 hypothetical protein.
  
     0.668
Coch_0407
KEGG: gfo:GFO_0092 secreted protein.
  
     0.660
Coch_0216
TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: pgn:PGN_0549 dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.652
Coch_0704
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; short-chain dehydrogenase/reductase SDR; dTDP-4- dehydrorhamnose reductase; KEGG: bfs:BF2600 DNTP-hexose dehydratase-epimerase.
  
  
 0.652
Coch_1519
KEGG: bfr:BF4107 hypothetical protein.
  
  
 0.648
Coch_2130
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.648
Coch_1110
PFAM: WxcM domain protein domain protein; KEGG: fjo:Fjoh_0335 hypothetical protein.
  
  
 0.637
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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