STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
Coch_1925PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: gfo:GFO_2886 short-chain dehydrogenase/reductase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (225 aa)    
Predicted Functional Partners:
Coch_1924
TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: bth:BT_3739 Na+/dicarboxylate or sulfate symporter.
       0.773
Coch_1926
PFAM: YCII-related; KEGG: smu:SMU.2121c hypothetical protein.
       0.661
Coch_1927
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ssa:SSA_0993 hypothetical protein.
  
    0.627
Coch_1855
PFAM: peptidylprolyl isomerase FKBP-type; KEGG: gfo:GFO_0787 gliding motility protein GldI.
  
 
   0.522
Coch_1923
KEGG: sgo:SGO_1740 integral membrane protein.
       0.464
Coch_1874
KEGG: fps:FP0585 hypothetical protein.
  
     0.435
Coch_1629
KEGG: fjo:Fjoh_4782 acyl-CoA synthetase (AMP- forming)/AMP-acid ligase II-like protein.
  
 
 0.419
Coch_2014
PFAM: AMP-dependent synthetase and ligase; KEGG: ank:AnaeK_3108 AMP-dependent synthetase and ligase.
  
 
 0.419
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.