Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Coch_1959KEGG: fps:FP2016 hypothetical protein. (222 aa)    
Predicted Functional Partners:
Coch_0750
KEGG: gfo:GFO_3258 conserved hypothetical protein, secreted.
  
     0.727
Coch_1612
KEGG: gfo:GFO_2695 hypothetical protein.
 
     0.695
Coch_1960
KEGG: fjo:Fjoh_0103 hypothetical protein.
 
     0.695
Coch_1681
KEGG: gfo:GFO_3412 conserved hypothetical protein, membrane.
  
     0.590
Coch_1461
KEGG: fjo:Fjoh_2111 hypothetical protein.
  
     0.557
Coch_1460
KEGG: fps:FP1615 hypothetical protein.
  
     0.555
Coch_0212
KEGG: fps:FP0732 hypothetical protein.
  
     0.548
Coch_1932
KEGG: fps:FP1986 hypothetical protein.
 
     0.543
Coch_1201
KEGG: gfo:GFO_1792 hypothetical protein.
  
     0.531
Coch_2148
KEGG: fps:FP0664 hypothetical protein.
  
     0.530
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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