Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_1977PFAM: Biopolymer transport protein ExbD/TolR; KEGG: gfo:GFO_2901 ExbD/TolR family biopolymer transport protein. (128 aa)    
Predicted Functional Partners:
Coch_1976
PFAM: MotA/TolQ/ExbB proton channel; KEGG: gfo:GFO_2902 MotA/TolQ/ExbB family biopolymer transport protein.
 
 
 0.974
Coch_1978
Outer membrane transport energization protein TonB; KEGG: gfo:GFO_2900 hypothetical protein; TC 2.C.1.1.1.
 
 
 0.958
Coch_0262
PFAM: MotA/TolQ/ExbB proton channel; KEGG: gfo:GFO_0088 ExbB-like MotA/TolQ/ExbB family biopolymer transport protein.
 
 
 0.826
Coch_0189
TIGRFAM: TonB family protein; KEGG: gfo:GFO_0186 hypothetical protein.
 
 
 0.786
Coch_1080
KEGG: bvu:BVU_2196 integral membrane protein.
  
 
 0.732
Coch_0798
TIGRFAM: TonB family protein; KEGG: bfs:BF3767 hypothetical protein.
 
 
 0.722
Coch_1739
KEGG: bth:BT_4200 hypothetical protein.
  
 
 0.675
Coch_0551
PFAM: Tetratricopeptide TPR_2 repeat protein; Tetratricopeptide TPR_4; TPR repeat-containing protein; Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; Tetratricopeptide domain protein; KEGG: gfo:GFO_2543 conserved hypothetical protein, secreted.
 
  
 0.669
Coch_1979
KEGG: fjo:Fjoh_0461 FolC bifunctional protein; TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase middle domain protein.
     
 0.631
Coch_0552
KEGG: fjo:Fjoh_2248 TonB-dependent receptor.
 
  
 0.537
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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