STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Coch_1978Outer membrane transport energization protein TonB; KEGG: gfo:GFO_2900 hypothetical protein; TC 2.C.1.1.1. (275 aa)    
Predicted Functional Partners:
Coch_1977
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: gfo:GFO_2901 ExbD/TolR family biopolymer transport protein.
 
 
 0.956
Coch_1976
PFAM: MotA/TolQ/ExbB proton channel; KEGG: gfo:GFO_2902 MotA/TolQ/ExbB family biopolymer transport protein.
 
 
 0.911
Coch_0552
KEGG: fjo:Fjoh_2248 TonB-dependent receptor.
 
 
 0.862
Coch_0278
KEGG: gfo:GFO_1098 secreted protein.
 
   0.850
Coch_1022
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bth:BT_2818 hypothetical protein.
  
 
 0.781
Coch_0260
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: gfo:GFO_0090 hypothetical protein.
 
 
 0.763
Coch_1775
KEGG: fjo:Fjoh_0264 hypothetical protein.
  
     0.758
Coch_1437
KEGG: gfo:GFO_2916 hypothetical protein.
 
 
   0.754
Coch_0407
KEGG: gfo:GFO_0092 secreted protein.
  
     0.752
Coch_0551
PFAM: Tetratricopeptide TPR_2 repeat protein; Tetratricopeptide TPR_4; TPR repeat-containing protein; Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; Tetratricopeptide domain protein; KEGG: gfo:GFO_2543 conserved hypothetical protein, secreted.
 
   
 0.732
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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