STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Coch_2004PFAM: Septum formation initiator; KEGG: gfo:GFO_0811 hypothetical protein. (102 aa)    
Predicted Functional Partners:
Coch_0215
KEGG: gfo:GFO_2766 FtsQ-like cell division protein.
 
 
 
 0.923
Coch_2005
TIGRFAM: uridine kinase; PFAM: phosphoribulokinase/uridine kinase; KEGG: gfo:GFO_0812 uridine kinase.
       0.824
Coch_2003
KEGG: ssa:SSA_1450 hypothetical protein.
       0.675
Coch_0324
Hypothetical protein; KEGG: gfo:GFO_1901 conserved hypothetical protein, secreted.
 
     0.672
Coch_0806
KEGG: gfo:GFO_3012 gliding motility protein GldO.
  
     0.660
Coch_1612
KEGG: gfo:GFO_2695 hypothetical protein.
  
     0.646
Coch_1597
KEGG: fps:FP2062 peptidoglycan glycosyltransferase FtsI precursor; PFAM: penicillin-binding protein transpeptidase; PASTA domain containing protein; SMART: PASTA domain containing protein.
 
 
 0.620
Coch_1744
PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: fjo:Fjoh_1852 hypothetical protein.
  
     0.566
Coch_2002
PFAM: thioesterase superfamily protein; KEGG: gfo:GFO_2077 thioesterase superfamily protein.
       0.543
Coch_2001
TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: fps:FP0869 putative translation factor; Belongs to the SUA5 family.
       0.539
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.