STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Coch_2006PFAM: conserved hypothetical protein; KEGG: cbk:CLL_A1661 hypothetical protein. (287 aa)    
Predicted Functional Partners:
Coch_1785
KEGG: hypothetical protein; K08900 mitochondrial chaperone BCS1.
   
 
 0.657
Coch_0406
PFAM: VWA containing CoxE family protein; KEGG: ecm:EcSMS35_3514 VWA domain protein.
  
     0.634
Coch_0255
PFAM: ATPase associated with various cellular activities AAA_5; KEGG: mpo:Mpop_1512 ATPase associated with various cellular activities AAA_5.
  
     0.621
Coch_0329
KEGG: amr:AM1_4013 hypothetical protein.
  
     0.599
Coch_2004
PFAM: Septum formation initiator; KEGG: gfo:GFO_0811 hypothetical protein.
       0.523
Coch_2005
TIGRFAM: uridine kinase; PFAM: phosphoribulokinase/uridine kinase; KEGG: gfo:GFO_0812 uridine kinase.
       0.523
Coch_2007
Hypothetical protein.
       0.522
Coch_2131
Cellulase; PFAM: glycoside hydrolase family 6; KEGG: msm:MSMEG_6752 endoglucanase A; Belongs to the glycosyl hydrolase family 6.
  
     0.511
Coch_2132
Cellulase; PFAM: glycoside hydrolase family 6; KEGG: mbb:BCG_0093 putative cellulase celA1 (endoglucanase); Belongs to the glycosyl hydrolase family 6.
  
     0.500
Coch_2017
PFAM: zinc finger SWIM domain protein; KEGG: bth:BT_3906 hypothetical protein.
  
     0.471
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.