STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Coch_2012KEGG: gfo:GFO_0621 secreted protein. (212 aa)    
Predicted Functional Partners:
trmD
tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.
       0.807
Coch_1199
PFAM: zinc/iron permease; KEGG: fjo:Fjoh_2493 hypothetical protein.
  
     0.741
Coch_2011
KEGG: gfo:GFO_1404 thioredoxin-like protein.
 
     0.740
Coch_2014
PFAM: AMP-dependent synthetase and ligase; KEGG: ank:AnaeK_3108 AMP-dependent synthetase and ligase.
       0.686
Coch_0521
KEGG: fps:FP0982 ATP-dependent exodeoxyribonuclease.
  
     0.651
Coch_2110
KEGG: fps:FP0400 hypothetical protein.
  
     0.595
Coch_1428
KEGG: bvu:BVU_3819 hypothetical protein.
  
     0.571
Coch_0789
KEGG: gfo:GFO_1876 hypothetical protein.
  
     0.569
Coch_0522
KEGG: gfo:GFO_1825 hypothetical protein.
  
     0.565
Coch_0189
TIGRFAM: TonB family protein; KEGG: gfo:GFO_0186 hypothetical protein.
  
     0.555
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.