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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Coch_2017PFAM: zinc finger SWIM domain protein; KEGG: bth:BT_3906 hypothetical protein. (481 aa)    
Predicted Functional Partners:
Coch_0255
PFAM: ATPase associated with various cellular activities AAA_5; KEGG: mpo:Mpop_1512 ATPase associated with various cellular activities AAA_5.
 
     0.794
Coch_0329
KEGG: amr:AM1_4013 hypothetical protein.
 
     0.794
Coch_0406
PFAM: VWA containing CoxE family protein; KEGG: ecm:EcSMS35_3514 VWA domain protein.
 
     0.792
Coch_2016
KEGG: msy:MS53_0371 hypothetical protein.
       0.788
Coch_2006
PFAM: conserved hypothetical protein; KEGG: cbk:CLL_A1661 hypothetical protein.
  
     0.471
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.