Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Coch_2045KEGG: fps:FP0716 hypothetical protein. (124 aa)    
Predicted Functional Partners:
Coch_1501
KEGG: gfo:GFO_0649 hypothetical protein.
 
     0.683
Coch_2046
PFAM: protein of unknown function DUF161; KEGG: pdi:BDI_3009 putative transporter.
       0.603
Coch_0461
PFAM: protein of unknown function DUF450; KEGG: fps:FP1054 hypothetical protein.
  
     0.545
Coch_2044
TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: gfo:GFO_3624 agmatinase; Belongs to the arginase family.
       0.526
Coch_0340
PFAM: Smr protein/MutS2; KEGG: gfo:GFO_1881 Smr domain protein-possibly involved in DNA repair.
  
     0.524
Coch_1769
KEGG: gfo:GFO_3422 hypothetical protein.
  
     0.518
Coch_0105
KEGG: fps:FP0106 hypothetical protein.
 
     0.483
Coch_0207
PFAM: protein of unknown function DUF177; KEGG: gfo:GFO_3340 protein containing DUF177.
  
     0.450
Coch_0009
PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: fps:FP1679 hypothetical protein.
  
     0.444
Coch_0211
KEGG: fjo:Fjoh_2499 hypothetical protein.
  
     0.438
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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