Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Coch_2048PFAM: Endonuclease/exonuclease/phosphatase; KEGG: fjo:Fjoh_1565 endonuclease/exonuclease/phosphatase. (274 aa)    
Predicted Functional Partners:
Coch_2049
KEGG: gfo:GFO_2688 peptidase, family M14.
 
     0.839
Coch_2047
PFAM: aminotransferase class I and II; KEGG: fps:FP0412 aspartate transaminase AspC1.
       0.741
Coch_2050
Nicotinamidase; PFAM: isochorismatase hydrolase; KEGG: cbc:CbuK_0806 nicotinamidase.
  
    0.671
Coch_1126
KEGG: pdi:BDI_3066 hypothetical protein.
 
     0.649
Coch_1273
Porphobilinogen synthase; PFAM: delta-aminolevulinic acid dehydratase; KEGG: gfo:GFO_3230 delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
      0.614
Coch_1838
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
    
   0.613
Coch_1124
PFAM: phospholipase/Carboxylesterase; KEGG: bth:BT_3286 hypothetical protein.
 
     0.569
Coch_2046
PFAM: protein of unknown function DUF161; KEGG: pdi:BDI_3009 putative transporter.
  
    0.502
Coch_0105
KEGG: fps:FP0106 hypothetical protein.
  
  
 0.468
Coch_0356
PFAM: Colicin V production protein; KEGG: gfo:GFO_3421 colicin V production protein.
  
    0.439
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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