Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Coch_2065PFAM: Kelch repeat-containing protein; KEGG: bfr:BF1735 hypothetical protein. (418 aa)    
Predicted Functional Partners:
Coch_2066
PFAM: N-acylglucosamine 2-epimerase; KEGG: bth:BT_3605 N-acylglucosamine 2-epimerase.
 
     0.920
Coch_2064
PFAM: major facilitator superfamily MFS_1; KEGG: bvu:BVU_4119 major facilitator family transporter.
 
     0.892
Coch_2063
N-acetylneuraminate lyase; PFAM: dihydrodipicolinate synthetase; KEGG: pdi:BDI_2941 N-acetylneuraminate lyase; Belongs to the DapA family.
 
   
 0.853
Coch_1034
Sialate O-acetylesterase; PFAM: protein of unknown function DUF303 acetylesterase putative; lipolytic protein G-D-S-L family; KEGG: bfs:BF1809 sialate O-acetylesterase.
     0.839
Coch_0016
Exo-alpha-sialidase; KEGG: bvu:BVU_4143 sialidase.
 
     0.787
Coch_2061
PFAM: RagB/SusD domain protein; KEGG: bfs:BF1718 hypothetical protein.
 
     0.760
Coch_2062
PFAM: TonB-dependent receptor plug; KEGG: bfr:BF1710 hypothetical protein.
 
     0.678
Coch_0440
PFAM: sulfatase; KEGG: bth:BT_1624 putative secreted sulfatase.
  
     0.609
Coch_0200
KEGG: pdi:BDI_2833 ATP/GTP-binding site.
  
     0.597
Coch_1140
PFAM: RagB/SusD domain protein; KEGG: bfs:BF4247 hypothetical protein.
  
     0.581
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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