Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Coch_2072PFAM: glycosyl transferase group 1; KEGG: hypothetical protein. (374 aa)    
Predicted Functional Partners:
Coch_0232
PFAM: LmbE family protein; KEGG: fjo:Fjoh_4717 LmbE family protein.
 
 
 0.879
bshC
KEGG: fjo:Fjoh_4974 hypothetical protein; Belongs to the BshC family.
  
   
 0.777
Coch_0058
PFAM: protein of unknown function DUF1094; KEGG: fjo:Fjoh_0924 hypothetical protein; Belongs to the UPF0403 family.
  
     0.767
Coch_2071
KEGG: sml:Smlt3344 hypothetical protein.
       0.545
Coch_1749
KEGG: sus:Acid_4617 hypothetical protein.
  
     0.520
Coch_1111
PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: fps:FP1286 FnlB protein involved in UDP-L- FucpNAc biosynthesis (a nucleotide sugar precursor for antigen-O biosynthesis).
  
  
 0.465
Coch_2011
KEGG: gfo:GFO_1404 thioredoxin-like protein.
  
     0.414
Coch_0631
PFAM: alpha amylase catalytic region; Domain of unknown function DUF1939; SMART: alpha amylase catalytic sub domain; KEGG: gfo:GFO_2141 cytoplasmic alpha-amylase.
   
  0.404
Coch_0990
PFAM: alpha amylase all-beta; glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: sat:SYN_02257 1,4-alpha-glucan branching enzyme.
   
  0.404
Coch_1900
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: fjo:Fjoh_2593 alpha amylase, catalytic region.
   
  0.404
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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