Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Coch_2086PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: chu:CHU_0633 hypothetical protein. (219 aa)    
Predicted Functional Partners:
Coch_0528
PFAM: YCII-related; KEGG: chu:CHU_2475 hypothetical protein.
  
     0.730
Coch_0529
Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: chu:CHU_2476 ECF subfamily RNA polymerase sigma-70 factor.
  
     0.672
Coch_0276
PFAM: DinB family protein; KEGG: fjo:Fjoh_0790 DinB family protein.
  
     0.658
Coch_1643
Transcriptional regulator, AraC family; KEGG: aas:Aasi_0749 hypothetical protein.
 
     0.588
Coch_1642
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: aas:Aasi_0748 hypothetical protein.
  
     0.542
Coch_2088
PFAM: Electron transfer flavoprotein alpha subunit; Electron transfer flavoprotein alpha/beta-subunit; KEGG: gfo:GFO_0292 electron transfer flavoprotein subunit alpha.
     
 0.529
Coch_2087
PFAM: Electron transfer flavoprotein alpha/beta- subunit; KEGG: fps:FP0336 electron transfer flavoprotein subunit beta.
       0.520
Coch_1930
KEGG: bvu:BVU_2306 hypothetical protein.
  
     0.497
Coch_0134
KEGG: fjo:Fjoh_1568 hypothetical protein.
  
    0.468
Coch_1746
TIGRFAM: 5'-nucleotidase, lipoprotein e(P4) family; PFAM: acid phosphatase (Class B); KEGG: hypothetical protein; K01078 acid phosphatase.
  
     0.433
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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