Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_2113PFAM: Mammalian cell entry related domain protein; KEGG: fjo:Fjoh_4584 hypothetical protein. (316 aa)    
Predicted Functional Partners:
Coch_1553
PFAM: protein of unknown function DUF140; KEGG: fps:FP1378 ABC transporter permease.
 
 0.995
Coch_1498
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fps:FP1379 ABC transporter ATPase.
 
 0.989
Coch_2114
KEGG: fps:FP0754 Fe-S oxidoreductase N-terminal region.
       0.807
Coch_2112
PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; KEGG: gfo:GFO_1639 N-acetylmuramoyl-L-alanine amidase.
 
     0.800
Coch_2115
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fjo:Fjoh_4996 ABC transporter related.
       0.687
Coch_1593
PFAM: OmpA/MotB domain protein; KEGG: gfo:GFO_2317 OmpA/MotB family outer membrane protein.
 
 
   0.613
Coch_1357
TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: fps:FP2096 outer membrane protein precursor.
 
    0.552
Coch_0452
PFAM: surface antigen (D15); KEGG: gfo:GFO_0385 conserved hypothetical protein, secreted.
 
    0.495
gpmA
Phosphoglycerate mutase 1 family; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
  
    0.484
Coch_2119
KEGG: fjo:Fjoh_1589 hypothetical protein.
 
     0.461
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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