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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_2114KEGG: fps:FP0754 Fe-S oxidoreductase N-terminal region. (436 aa)    
Predicted Functional Partners:
Coch_0507
PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: fjo:Fjoh_4582 hypothetical protein.
     0.980
Coch_2113
PFAM: Mammalian cell entry related domain protein; KEGG: fjo:Fjoh_4584 hypothetical protein.
       0.807
Coch_2112
PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; KEGG: gfo:GFO_1639 N-acetylmuramoyl-L-alanine amidase.
       0.754
Coch_2115
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fjo:Fjoh_4996 ABC transporter related.
  
    0.700
Coch_1612
KEGG: gfo:GFO_2695 hypothetical protein.
  
 
 0.688
Coch_2087
PFAM: Electron transfer flavoprotein alpha/beta- subunit; KEGG: fps:FP0336 electron transfer flavoprotein subunit beta.
 
  
 0.640
Coch_2088
PFAM: Electron transfer flavoprotein alpha subunit; Electron transfer flavoprotein alpha/beta-subunit; KEGG: gfo:GFO_0292 electron transfer flavoprotein subunit alpha.
 
  
 0.598
Coch_1425
KEGG: gfo:GFO_0161 iron-sulfur binding oxidoreductase.
 
  
 0.558
Coch_1625
KEGG: fjo:Fjoh_4590 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.471
Coch_2116
PFAM: peptidase U32; KEGG: fjo:Fjoh_0903 peptidase U32.
       0.465
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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