Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_2115PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fjo:Fjoh_4996 ABC transporter related. (621 aa)    
Predicted Functional Partners:
Coch_2114
KEGG: fps:FP0754 Fe-S oxidoreductase N-terminal region.
  
    0.700
Coch_2113
PFAM: Mammalian cell entry related domain protein; KEGG: fjo:Fjoh_4584 hypothetical protein.
       0.687
Coch_2112
PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; KEGG: gfo:GFO_1639 N-acetylmuramoyl-L-alanine amidase.
       0.641
rplD
Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel.
   
 
 0.612
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
   
   0.612
rpsC
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
   0.609
rpsO
Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
   
   0.603
rpmD
TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30; KEGG: gfo:GFO_2821 50S ribosomal protein L30.
   
   0.601
rpmH
TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; KEGG: fjo:Fjoh_0100 ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
   
   0.598
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 
 0.597
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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