Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Coch_2118KEGG: fjo:Fjoh_0127 hypothetical protein. (204 aa)    
Predicted Functional Partners:
Coch_2120
KEGG: fps:FP2472 hypothetical protein.
 
     0.785
Coch_2119
KEGG: fjo:Fjoh_1589 hypothetical protein.
       0.710
Coch_0675
KEGG: bfs:BF3547 hypothetical protein.
  
     0.704
Coch_2122
KEGG: hypothetical protein.
  
     0.671
Coch_0939
KEGG: fps:FP2138 hypothetical protein.
  
     0.651
Coch_2117
KEGG: fjo:Fjoh_0902 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
       0.648
Coch_2116
PFAM: peptidase U32; KEGG: fjo:Fjoh_0903 peptidase U32.
  
    0.586
Coch_1073
KEGG: fjo:Fjoh_2893 hypothetical protein.
  
    0.505
Coch_0237
KEGG: fps:FP1635 hypothetical protein.
  
     0.472
Coch_1074
PFAM: TonB-dependent receptor plug; KEGG: fjo:Fjoh_2894 TonB-dependent receptor, plug.
  
     0.472
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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