Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_2121KEGG: gfo:GFO_1565 uracil phosphoribosyltransferase. (217 aa)    
Predicted Functional Partners:
Coch_2005
TIGRFAM: uridine kinase; PFAM: phosphoribulokinase/uridine kinase; KEGG: gfo:GFO_0812 uridine kinase.
  
 0.973
pyrH
Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
   
 
 0.960
Coch_1970
TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: fps:FP0537 orotidine-5'-phosphate decarboxylase.
  
 
 0.929
Coch_1827
PFAM: purine or other phosphorylase family 1; KEGG: fjo:Fjoh_2837 purine phosphorylase family 1.
  
  
 0.921
Coch_1793
PFAM: metallophosphoesterase; KEGG: fjo:Fjoh_3473 metallophosphoesterase; Belongs to the 5'-nucleotidase family.
  
  
 0.919
surE
Stationary-phase survival protein SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
     
 0.911
Coch_0169
PFAM: phosphoribosyltransferase; KEGG: gfo:GFO_2406 phosphoribosyltransferase.
     
 0.910
Coch_0792
KEGG: fjo:Fjoh_1019 RpiB/LacA/LacB family sugar- phosphate isomerase; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase.
 
    0.910
Coch_1187
PFAM: phosphoribosyltransferase; KEGG: fjo:Fjoh_4547 phosphoribosyltransferase.
     
 0.910
Coch_1403
Maf protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
     
  0.900
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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