Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Coch_2124PFAM: conserved hypothetical protein; KEGG: gfo:GFO_2399 secreted protein containing DUF1343. (405 aa)    
Predicted Functional Partners:
Coch_1483
PFAM: glycoside hydrolase family 3 domain protein; beta-lactamase; KEGG: gfo:GFO_1634 family 3 glycosyl hydrolase/beta- lactamase fusion protein.
  
 0.908
Coch_2125
PFAM: protein of unknown function DUF214; KEGG: gfo:GFO_2398 lipoprotein releasing system transmembrane protein.
       0.652
Coch_1626
KEGG: fps:FP1612 hypothetical protein.
  
    0.606
Coch_2126
KEGG: tbd:Tbd_2628 hypothetical protein.
       0.400
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
       0.400
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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