Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Coch_2135KEGG: gfo:GFO_1635 hypothetical protein. (160 aa)    
Predicted Functional Partners:
Coch_1769
KEGG: gfo:GFO_3422 hypothetical protein.
  
     0.744
Coch_1512
KEGG: gfo:GFO_1471 hypothetical protein.
  
     0.616
bshC
KEGG: fjo:Fjoh_4974 hypothetical protein; Belongs to the BshC family.
  
     0.607
Coch_0396
KEGG: fjo:Fjoh_0737 hypothetical protein.
  
     0.603
smpB
SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]
       0.561
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.513
Coch_0380
PFAM: DoxX family protein; KEGG: gfo:GFO_0431 conserved hypothetical protein, membrane.
  
     0.494
Coch_1749
KEGG: sus:Acid_4617 hypothetical protein.
  
     0.493
Coch_0058
PFAM: protein of unknown function DUF1094; KEGG: fjo:Fjoh_0924 hypothetical protein; Belongs to the UPF0403 family.
  
     0.485
rpmF
TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: gfo:GFO_3341 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
     0.482
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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