Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Coch_2144PFAM: peptidase S41; SMART: peptidase S41; KEGG: gfo:GFO_1839 secreted peptidase, family S41. (492 aa)    
Predicted Functional Partners:
Coch_2143
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: fjo:Fjoh_1048 ferredoxin.
       0.773
Coch_1877
KEGG: gfo:GFO_3081 hypothetical protein.
  
     0.622
Coch_1635
KEGG: fps:FP1953 hypothetical protein.
  
     0.599
Coch_1828
KEGG: gfo:GFO_0407 hypothetical protein.
  
     0.567
Coch_0023
KEGG: fjo:Fjoh_0096 hypothetical protein.
 
     0.549
Coch_0951
KEGG: gfo:GFO_0627 conserved hypothetical protein, secreted.
  
 
   0.490
Coch_0486
KEGG: fjo:Fjoh_1469 hypothetical protein.
 
     0.472
Coch_1201
KEGG: gfo:GFO_1792 hypothetical protein.
  
     0.469
Coch_1243
KEGG: gfo:GFO_3541 conserved hypothetical protein, secreted.
  
     0.466
Coch_1548
PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: fps:FP1402 hypothetical protein.
  
     0.464
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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