Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
recODNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (238 aa)    
Predicted Functional Partners:
recR
Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
   
 
 0.821
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
 
     0.727
Coch_1405
TIGRFAM: rod shape-determining protein MreD; KEGG: gfo:GFO_2960 conserved hypothetical protein, membrane.
  
     0.722
Coch_0795
PFAM: PhoH family protein; KEGG: gfo:GFO_1909 phosphate starvation-inducible protein.
  
  
 0.718
Coch_0085
KEGG: fjo:Fjoh_0132 hypothetical protein.
  
     0.668
Coch_0612
PFAM: protein of unknown function DUF721; KEGG: fjo:Fjoh_4977 hypothetical protein.
  
     0.608
Coch_0581
KEGG: gfo:GFO_1440 hypothetical protein.
  
     0.599
Coch_0205
KEGG: gfo:GFO_2272 hypothetical protein.
  
     0.582
era
GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
  
  
 0.575
Coch_1724
PFAM: Peptidase M23; KEGG: gfo:GFO_1878 secreted peptidase, family M23.
 
   
 0.569
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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