STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Coch_2161PFAM: Abortive infection protein; KEGG: gfo:GFO_2309 hypothetical protein. (291 aa)    
Predicted Functional Partners:
Coch_2160
Alpha-L-fucosidase; PFAM: coagulation factor 5/8 type domain protein; KEGG: fjo:Fjoh_2028 alpha-L-fucosidase.
       0.776
Coch_0407
KEGG: gfo:GFO_0092 secreted protein.
  
     0.765
Coch_1775
KEGG: fjo:Fjoh_0264 hypothetical protein.
  
     0.739
Coch_0278
KEGG: gfo:GFO_1098 secreted protein.
  
     0.735
Coch_1201
KEGG: gfo:GFO_1792 hypothetical protein.
  
     0.710
Coch_1877
KEGG: gfo:GFO_3081 hypothetical protein.
  
     0.684
Coch_1460
KEGG: fps:FP1615 hypothetical protein.
  
     0.680
Coch_1551
KEGG: fjo:Fjoh_0265 hypothetical protein.
  
     0.679
Coch_0951
KEGG: gfo:GFO_0627 conserved hypothetical protein, secreted.
  
     0.660
Coch_0212
KEGG: fps:FP0732 hypothetical protein.
  
     0.614
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.