Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Coch_2165PFAM: alpha/beta hydrolase fold; KEGG: fjo:Fjoh_0693 alpha/beta hydrolase fold. (255 aa)    
Predicted Functional Partners:
pyrD
Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
     
 0.697
Coch_0415
PFAM: alpha/beta hydrolase fold; KEGG: gfo:GFO_2777 alpha/beta fold hydrolase.
  
     0.582
Coch_0081
PFAM: peptidase S51 dipeptidase E; KEGG: fjo:Fjoh_1768 peptidase E; Belongs to the peptidase S51 family.
  
    0.514
Coch_0730
PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: fjo:Fjoh_1932 acyl-CoA dehydrogenase domain- containing protein.
   
 0.477
Coch_2164
KEGG: ssa:SSA_0273 hypothetical protein.
       0.427
Coch_1082
PFAM: beta-lactamase; KEGG: gfo:GFO_3235 secreted beta-lactamase family protein.
 
   
 0.419
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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