Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_2172KEGG: gfo:GFO_3478 hypothetical protein. (190 aa)    
Predicted Functional Partners:
recR
Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
  
    0.775
Coch_0464
KEGG: gfo:GFO_0531 hypothetical protein.
  
     0.764
Coch_2180
Hypothetical protein; KEGG: fjo:Fjoh_2098 TonB-dependent receptor.
  
     0.725
Coch_2170
Protein tyrosine phosphatase; KEGG: gfo:GFO_0629 low molecular weight phosphotyrosine protein phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight.
       0.718
Coch_0607
PFAM: Uroporphyrinogen III synthase HEM4; KEGG: gfo:GFO_0106 uroporphyrinogen-III synthase.
  
     0.712
Coch_0776
KEGG: gfo:GFO_2980 conserved hypothetical protein, secreted.
 
     0.686
Coch_0796
KEGG: bvu:BVU_0280 hypothetical protein.
  
     0.664
Coch_1557
TIGRFAM: ribosomal subunit interface protein; KEGG: fjo:Fjoh_1935 putative sigma 54 modulation protein/ribosomal protein S30EA.
  
    0.663
Coch_1501
KEGG: gfo:GFO_0649 hypothetical protein.
  
     0.652
Coch_0205
KEGG: gfo:GFO_2272 hypothetical protein.
  
     0.642
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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