Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_2175PFAM: phospholipase A1; KEGG: aci:ACIAD1354 putative phospholipase A1 precursor (PldA). (310 aa)    
Predicted Functional Partners:
Coch_1992
KEGG: gfo:GFO_2697 phosphatidylserine decarboxylase; TIGRFAM: phosphatidylserine decarboxylase related protein; PFAM: phosphatidylserine decarboxylase-related.
     
  0.900
Coch_2102
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: gfo:GFO_0587 CDP-diacylglycerol-serine O- phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
     
  0.900
Coch_0452
PFAM: surface antigen (D15); KEGG: gfo:GFO_0385 conserved hypothetical protein, secreted.
    
 
 0.527
Coch_1357
TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: fps:FP2096 outer membrane protein precursor.
    
 
 0.527
prfC
Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.
  
    0.513
Coch_0943
KEGG: pdi:BDI_2049 hypothetical protein.
  
 
   0.509
Coch_2174
PFAM: regulatory protein TetR; KEGG: fjo:Fjoh_1265 TetR family transcriptional regulator.
       0.490
Coch_1502
TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: fjo:Fjoh_3469 DNA uptake lipoprotein-like protein.
    
 
 0.425
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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