Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Coch_2181PFAM: Proline dehydrogenase; KEGG: fps:FP1706 putative antibiotic resistance protein. (393 aa)    
Predicted Functional Partners:
Coch_1569
TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: fps:FP0415 1-pyrroline-5-carboxylate dehydrogenase.
 
 0.620
Coch_1463
PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: ote:Oter_1448 cytochrome bd ubiquinol oxidase subunit I.
   
 
 0.523
Coch_2179
TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; glucose-inhibited division protein A; KEGG: gfo:GFO_2165 dihydrolipoamide dehydrogenase.
  
  
 0.517
Coch_2180
Hypothetical protein; KEGG: fjo:Fjoh_2098 TonB-dependent receptor.
       0.491
Coch_0009
PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: fps:FP1679 hypothetical protein.
  
 
   0.452
Coch_1385
PFAM: Aldehyde Dehydrogenase; KEGG: gfo:GFO_0735 NADP-dependent glyceraldehyde-3- phosphate dehydrogenase.
 
 
 0.450
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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