Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Coch_2189KEGG: fjo:Fjoh_2926 hypothetical protein. (173 aa)    
Predicted Functional Partners:
Coch_2190
KEGG: fps:FP1047 hypothetical protein.
 
     0.860
Coch_1383
Protein involved in gliding motility GldD; KEGG: fjo:Fjoh_1540 hypothetical protein.
  
     0.742
Coch_0756
PFAM: protein of unknown function DUF323; KEGG: gfo:GFO_2892 gliding motility protein GldJ.
  
     0.731
Coch_1064
KEGG: gfo:GFO_2782 gliding motility protein GldB.
  
     0.725
Coch_1945
KEGG: gfo:GFO_1913 gliding motility protein GldG.
  
     0.720
Coch_0009
PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: fps:FP1679 hypothetical protein.
  
     0.686
Coch_1588
Hypothetical protein; KEGG: gfo:GFO_1837 conserved hypothetical protein, secreted.
  
     0.683
Coch_0552
KEGG: fjo:Fjoh_2248 TonB-dependent receptor.
  
     0.678
Coch_0551
PFAM: Tetratricopeptide TPR_2 repeat protein; Tetratricopeptide TPR_4; TPR repeat-containing protein; Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; Tetratricopeptide domain protein; KEGG: gfo:GFO_2543 conserved hypothetical protein, secreted.
  
     0.636
Coch_1430
KEGG: gfo:GFO_2924 hypothetical protein.
  
     0.633
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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