Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Coch_2190KEGG: fps:FP1047 hypothetical protein. (468 aa)    
Predicted Functional Partners:
Coch_2189
KEGG: fjo:Fjoh_2926 hypothetical protein.
 
     0.860
Coch_0775
KEGG: gfo:GFO_2979 secreted protein containing tetratricopeptide repeats.
 
    0.771
Coch_1460
KEGG: fps:FP1615 hypothetical protein.
  
    0.770
Coch_1791
KEGG: fjo:Fjoh_3471 hypothetical protein.
  
     0.770
Coch_1505
KEGG: gfo:GFO_3546 hypothetical protein.
  
     0.769
Coch_0261
KEGG: gfo:GFO_0089 membrane protein.
  
     0.768
Coch_1878
KEGG: fjo:Fjoh_2510 hypothetical protein.
  
     0.766
Coch_0331
Hypothetical protein; KEGG: gfo:GFO_2503 thiol-disulfide oxidoreductase.
  
     0.765
Coch_1728
KEGG: gfo:GFO_1569 secreted protein.
  
     0.765
Coch_0983
Hypothetical protein; KEGG: gfo:GFO_0093 conserved hypothetical protein, membrane.
  
    0.761
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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