STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Coch_2191PFAM: Rhomboid family protein; KEGG: bth:BT_2832 rhomboid family protein. (262 aa)    
Predicted Functional Partners:
Coch_2192
lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
       0.773
Coch_2193
Hypothetical protein.
       0.678
Coch_1800
TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: gfo:GFO_3177 5-formyltetrahydrofolate cyclo- ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
  
  
 0.513
Coch_2189
KEGG: fjo:Fjoh_2926 hypothetical protein.
       0.479
Coch_2190
KEGG: fps:FP1047 hypothetical protein.
       0.479
Coch_2146
PFAM: Rhomboid family protein; KEGG: fps:FP1148 rhomboid family protein.
 
     0.466
tatA-2
Sec-independent translocation protein mttA/Hcf106; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
  
 
 0.444
Coch_1581
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: fjo:Fjoh_1949 PpiC-type peptidyl-prolyl cis- trans isomerase.
  
    0.437
Coch_2112
PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; KEGG: gfo:GFO_1639 N-acetylmuramoyl-L-alanine amidase.
   
   0.429
Coch_0326
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: fjo:Fjoh_0213 TPR repeat-containing protein.
 
     0.427
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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