STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aaci_0227PFAM: Anti-sigma-K factor RskA; KEGG: glo:Glov_1269 hypothetical protein. (277 aa)    
Predicted Functional Partners:
Aaci_0226
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: tgr:Tgr7_2634 RNA polymerase, sigma-24 subunit, ECF subfamily.
 
 
 
 0.854
Aaci_0230
KEGG: ppg:PputGB1_4140 hypothetical protein.
 
     0.789
Aaci_1037
Hypothetical protein.
  
     0.633
Aaci_2250
Hypothetical protein.
  
     0.609
Aaci_0228
PFAM: Amidase; KEGG: dol:Dole_2535 amidase; Belongs to the amidase family.
       0.526
Aaci_2044
KEGG: scl:sce7372 hypothetical protein.
  
     0.503
Aaci_0328
Hypothetical protein.
  
     0.477
Aaci_0239
Hypothetical protein; KEGG: cco:CCC13826_1906 flagellar biosynthetic protein FliQ.
  
     0.467
Aaci_1168
Hypothetical protein; KEGG: proteophosphoglycan ppg4.
  
     0.431
Aaci_0961
PFAM: GCN5-related N-acetyltransferase; KEGG: aha:AHA_1638 putative acetyltransferase.
  
     0.429
Your Current Organism:
Alicyclobacillus acidocaldarius DSM 446
NCBI taxonomy Id: 521098
Other names: A. acidocaldarius subsp. acidocaldarius DSM 446, Alicyclobacillus acidocaldarius subsp. acidocaldarius ATCC 27009, Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446, Alicyclobacillus acidocaldarius subsp. acidocaldarius IFO 15652, Alicyclobacillus acidocaldarius subsp. acidocaldarius JCM 5260, Alicyclobacillus acidocaldarius subsp. acidocaldarius NBRC 15652, Alicyclobacillus acidocaldarius subsp. acidocaldarius NCIB 11725, Alicyclobacillus acidocaldarius subsp. acidocaldarius str. DSM 446, Alicyclobacillus acidocaldarius subsp. acidocaldarius strain DSM 446
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.