STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnzRibonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. (313 aa)    
Predicted Functional Partners:
Aaci_0648
PFAM: major facilitator superfamily MFS_1; KEGG: rpc:RPC_3634 major facilitator transporter.
       0.718
Aaci_0643
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mxa:MXAN_5584 ABC transporter, ATP-binding protein.
 
    0.571
Aaci_0642
Multi- copper enzyme maturation ABC-type transport system permease component-like protein; KEGG: eba:ebA6266 hypothetical protein.
       0.523
Aaci_0645
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sml:Smlt3186 putative ABC transporter, ATP- binding protein.
  
    0.508
Aaci_0649
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; regulatory protein ArsR; SMART: regulatory protein MarR; KEGG: rpc:RPC_3635 MarR family transcriptional regulator.
       0.501
Aaci_0650
PFAM: sodium/hydrogen exchanger; TrkA-C domain protein; KEGG: pha:PSHAb0106 potassium/proton antiporter.
       0.496
Aaci_0644
Hypothetical protein.
       0.495
Aaci_0646
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: cja:CJA_0601 transcriptional regulator, GntR family.
       0.495
Aaci_1503
PFAM: peptidase C39 bacteriocin processing; KEGG: kpe:KPK_A0151 MceG.
 
   
 0.469
dinG
Exonuclease RNase T and DNA polymerase III; 3'-5' exonuclease.
  
  
 0.405
Your Current Organism:
Alicyclobacillus acidocaldarius DSM 446
NCBI taxonomy Id: 521098
Other names: A. acidocaldarius subsp. acidocaldarius DSM 446, Alicyclobacillus acidocaldarius subsp. acidocaldarius ATCC 27009, Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446, Alicyclobacillus acidocaldarius subsp. acidocaldarius IFO 15652, Alicyclobacillus acidocaldarius subsp. acidocaldarius JCM 5260, Alicyclobacillus acidocaldarius subsp. acidocaldarius NBRC 15652, Alicyclobacillus acidocaldarius subsp. acidocaldarius NCIB 11725, Alicyclobacillus acidocaldarius subsp. acidocaldarius str. DSM 446, Alicyclobacillus acidocaldarius subsp. acidocaldarius strain DSM 446
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