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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aaci_1663PFAM: Protein of unknown function UPF0302; conserved hypothetical protein. (190 aa)    
Predicted Functional Partners:
Aaci_0414
PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide repeat; KEGG: dal:Dalk_5269 TPR repeat-containing protein.
 
    0.694
Aaci_2675
Hypothetical protein; KEGG: vvy:VVA0375 TPR repeat-containing protein.
  
     0.639
Aaci_0431
TIGRFAM: transcription factor, RsfA family; KEGG: hypothetical protein.
  
     0.637
Aaci_1786
KEGG: hypothetical protein.
  
     0.623
Aaci_1264
TIGRFAM: transcription factor, RsfA family; KEGG: similar to homer-1b.
  
     0.616
Aaci_1687
Putative transcriptional regulator, XRE family; PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: vvy:VV2140 GGDEF family protein.
  
     0.616
Aaci_1664
KEGG: hypothetical protein.
 
     0.614
Aaci_1802
Hypothetical protein.
  
     0.584
Aaci_1478
PFAM: Spore coat protein E.
  
     0.581
Aaci_0415
PFAM: NUDIX hydrolase; KEGG: dma:DMR_p1_00280 hypothetical protein.
  
     0.536
Your Current Organism:
Alicyclobacillus acidocaldarius DSM 446
NCBI taxonomy Id: 521098
Other names: A. acidocaldarius subsp. acidocaldarius DSM 446, Alicyclobacillus acidocaldarius subsp. acidocaldarius ATCC 27009, Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446, Alicyclobacillus acidocaldarius subsp. acidocaldarius IFO 15652, Alicyclobacillus acidocaldarius subsp. acidocaldarius JCM 5260, Alicyclobacillus acidocaldarius subsp. acidocaldarius NBRC 15652, Alicyclobacillus acidocaldarius subsp. acidocaldarius NCIB 11725, Alicyclobacillus acidocaldarius subsp. acidocaldarius str. DSM 446, Alicyclobacillus acidocaldarius subsp. acidocaldarius strain DSM 446
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