STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aaci_2086PFAM: iron dependent repressor; FeoA family protein; regulatory protein MarR; SMART: iron dependent repressor; regulatory protein Crp; KEGG: tcx:Tcr_0904 iron dependent repressor. (224 aa)    
Predicted Functional Partners:
Aaci_2087
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: cvi:CV_2788 isomerase.
       0.773
Aaci_2011
Iron (metal) dependent repressor, DtxR family; PFAM: iron dependent repressor; SMART: iron dependent repressor; KEGG: rhi:NGR_b14390 transcriptional regulator MntR.
  
     0.547
Aaci_2085
PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: bbt:BBta_0953 putative D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
       0.538
Aaci_2088
PFAM: protein of unknown function DUF1094; Belongs to the UPF0403 family.
 
     0.533
Aaci_2084
PFAM: TM2 domain containing protein; KEGG: cff:CFF8240_1715 TM2.
 
     0.508
Aaci_2614
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: afr:AFE_0603 cation ABC transporter, ATP- binding protein, putative.
 
  
 0.472
Aaci_2083
TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
 
     0.437
Aaci_1037
Hypothetical protein.
  
     0.434
Aaci_2520
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: sat:SYN_02524 ferric uptake regulator family protein; Belongs to the Fur family.
  
  
 0.401
Your Current Organism:
Alicyclobacillus acidocaldarius DSM 446
NCBI taxonomy Id: 521098
Other names: A. acidocaldarius subsp. acidocaldarius DSM 446, Alicyclobacillus acidocaldarius subsp. acidocaldarius ATCC 27009, Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446, Alicyclobacillus acidocaldarius subsp. acidocaldarius IFO 15652, Alicyclobacillus acidocaldarius subsp. acidocaldarius JCM 5260, Alicyclobacillus acidocaldarius subsp. acidocaldarius NBRC 15652, Alicyclobacillus acidocaldarius subsp. acidocaldarius NCIB 11725, Alicyclobacillus acidocaldarius subsp. acidocaldarius str. DSM 446, Alicyclobacillus acidocaldarius subsp. acidocaldarius strain DSM 446
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