STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aaci_2157PFAM: Xylose isomerase domain protein TIM barrel; KEGG: csa:Csal_0292 4-hydroxyphenylpyruvate dioxygenase. (280 aa)    
Predicted Functional Partners:
Aaci_2153
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rlt:Rleg2_4779 oxidoreductase domain protein.
 
  
 0.857
Aaci_2155
PFAM: Xylose isomerase domain protein TIM barrel; AP endonuclease 2 domain protein; KEGG: ara:Arad_0117 hypothetical protein.
 
    0.850
Aaci_2154
PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; Oxidoreductase domain; KEGG: ecz:ECS88_1457 putative oxidoreductase, NADH- binding.
 
  
 0.845
Aaci_2156
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sml:Smlt1193 putative xylose isomerase family protein.
 
     0.832
Aaci_1576
PFAM: Myo-inositol catabolism IolB domain protein; KEGG: dde:Dde_0416 IolB protein.
 
  
 0.757
Aaci_2621
PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; Oxidoreductase domain; KEGG: mlo:mll1511 hypothetical protein.
 
  
 0.676
xylB
TIGRFAM: xylulokinase; PFAM: Carbohydrate kinase, FGGY-like; KEGG: scl:sce9296 xylulokinase.
 
 
 0.632
Aaci_0787
PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; KEGG: rle:RL2323 putative GFO/IDH/MocA dehydrogenase.
 
  
 0.590
Aaci_2206
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rlg:Rleg_4979 xylose isomerase domain protein TIM barrel.
  
     0.576
Aaci_2461
KEGG: ypb:YPTS_0329 hypothetical protein.
  
     0.573
Your Current Organism:
Alicyclobacillus acidocaldarius DSM 446
NCBI taxonomy Id: 521098
Other names: A. acidocaldarius subsp. acidocaldarius DSM 446, Alicyclobacillus acidocaldarius subsp. acidocaldarius ATCC 27009, Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446, Alicyclobacillus acidocaldarius subsp. acidocaldarius IFO 15652, Alicyclobacillus acidocaldarius subsp. acidocaldarius JCM 5260, Alicyclobacillus acidocaldarius subsp. acidocaldarius NBRC 15652, Alicyclobacillus acidocaldarius subsp. acidocaldarius NCIB 11725, Alicyclobacillus acidocaldarius subsp. acidocaldarius str. DSM 446, Alicyclobacillus acidocaldarius subsp. acidocaldarius strain DSM 446
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