STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aaci_2457PFAM: glycoside hydrolase family 28; KEGG: sde:Sde_0953 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 28 family. (508 aa)    
Predicted Functional Partners:
Aaci_1577
PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: esa:ESA_01824 altronate oxidoreductase.
 
   
 0.728
Aaci_2458
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc04137 putative transport system permease ABC transporter protein.
       0.717
Aaci_2462
PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; Oxidoreductase domain; KEGG: ara:Arad_4618 oxidoreducatse protein.
 
     0.694
Aaci_2460
PFAM: extracellular solute-binding protein family 1; KEGG: ara:Arad_4622 sugar ABC transporter.
     
 0.676
Aaci_2459
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ara:Arad_4624 sugar ABC transporter.
       0.670
Aaci_2328
KEGG: pat:Patl_2657 endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; SMART: glycoside hydrolase family 10.
 
   
 0.669
Aaci_0060
Alpha-glucuronidase; PFAM: Glycosyl hydrolase 67 middle domain protein; glycosyl hydrolase 67 C-teriminal domain protein; KEGG: hypothetical protein; K01235 alpha- glucuronidase.
  
     0.665
Aaci_1575
PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; KEGG: ypb:YPTS_3661 D-galactarate dehydratase/altronate hydrolase domain-containing protein.
 
   
 0.665
Aaci_0789
KEGG: hypothetical protein.
   
 
 0.657
Aaci_2461
KEGG: ypb:YPTS_0329 hypothetical protein.
       0.633
Your Current Organism:
Alicyclobacillus acidocaldarius DSM 446
NCBI taxonomy Id: 521098
Other names: A. acidocaldarius subsp. acidocaldarius DSM 446, Alicyclobacillus acidocaldarius subsp. acidocaldarius ATCC 27009, Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446, Alicyclobacillus acidocaldarius subsp. acidocaldarius IFO 15652, Alicyclobacillus acidocaldarius subsp. acidocaldarius JCM 5260, Alicyclobacillus acidocaldarius subsp. acidocaldarius NBRC 15652, Alicyclobacillus acidocaldarius subsp. acidocaldarius NCIB 11725, Alicyclobacillus acidocaldarius subsp. acidocaldarius str. DSM 446, Alicyclobacillus acidocaldarius subsp. acidocaldarius strain DSM 446
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