STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aaci_2903PFAM: inner-membrane translocator; KEGG: ara:Arad_8601 sugar ABC transporter; Belongs to the binding-protein-dependent transport system permease family. (329 aa)    
Predicted Functional Partners:
Aaci_2902
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: vap:Vapar_0373 sugar ABC transporter.
 0.994
Aaci_2277
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: cvi:CV_3016 ribose ABC transporter, substrate binding protein.
 0.985
Aaci_2279
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lhk:LHK_01712 RbsA.
 0.978
rbsA
ABC transporter related; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
 0.974
Aaci_2278
PFAM: inner-membrane translocator; KEGG: lhk:LHK_01713 RbsC; Belongs to the binding-protein-dependent transport system permease family.
  
  
 
0.910
Aaci_0708
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SM_b20503 putative sugar ABC transporter ATP-binding protein.
 
 0.896
Aaci_0260
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rle:pRL100463 putative ATP-binding component of ABC transporter.
 
 0.845
rbsD
RbsD or FucU transport; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
 
  
 0.837
Aaci_0711
KEGG: hsm:HSM_1947 ABC transporter, solute-binding, sugar transport.
 
 0.809
Aaci_0259
KEGG: scl:sce6008 xylose binding protein transport system.
   
 0.751
Your Current Organism:
Alicyclobacillus acidocaldarius DSM 446
NCBI taxonomy Id: 521098
Other names: A. acidocaldarius subsp. acidocaldarius DSM 446, Alicyclobacillus acidocaldarius subsp. acidocaldarius ATCC 27009, Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446, Alicyclobacillus acidocaldarius subsp. acidocaldarius IFO 15652, Alicyclobacillus acidocaldarius subsp. acidocaldarius JCM 5260, Alicyclobacillus acidocaldarius subsp. acidocaldarius NBRC 15652, Alicyclobacillus acidocaldarius subsp. acidocaldarius NCIB 11725, Alicyclobacillus acidocaldarius subsp. acidocaldarius str. DSM 446, Alicyclobacillus acidocaldarius subsp. acidocaldarius strain DSM 446
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