STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_0041KEGG: csc:Csac_0701 hypothetical protein. (484 aa)    
Predicted Functional Partners:
Athe_0038
KEGG: csc:Csac_0698 hypothetical protein.
 
     0.945
Athe_0040
PFAM: ABC-2 type transporter; KEGG: csc:Csac_0700 ABC-2 type transporter.
 
     0.943
Athe_0044
SMART: von Willebrand factor type A; KEGG: csc:Csac_0704 hypothetical protein.
 
     0.932
Athe_0045
PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: csc:Csac_0705 von Willebrand factor, type A.
 
     0.923
Athe_0043
KEGG: csc:Csac_0703 hypothetical protein.
 
     0.889
Athe_0039
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: csc:Csac_0699 ABC transporter related.
 
    0.832
Athe_0042
PFAM: ATPase associated with various cellular activities AAA_3; magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: csc:Csac_0702 ATPase.
 
     0.821
Athe_0542
KEGG: csc:Csac_0768 hypothetical protein.
  
    0.756
Athe_2295
PFAM: S-layer domain protein; KEGG: csc:Csac_2445 S-layer domain-containing protein.
  
  
 0.743
Athe_1573
KEGG: csc:Csac_0661 hypothetical protein.
  
  
 0.733
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.